Publications

2007

F. Azar, B. de Roquemaurel, A. Cerussi, N. Hajjioui, A. Li, B. Tromberg, F. Sauer, “ A 3D visualization and guidance system for handheld optical imaging devices in Medical Imaging 2007: Visualization and Image-Guided Procedures,” Proc. of SPIE Vol. 6509. (2007)

F. S. Azar, K. Lee, R. Choe, A. Corlu, S. D. Konecky, and A. G. Yodh, "Joint Analysis of Non-Concurrent Magnetic Resonance Imaging and Diffuse Optical Tomography of Breast Cancer," Proc. of SPIE 6434. (2007)

F. S. Azar, K. Lee, A. Khamene, R. Choe, A. Corlu, S. D. Konecky, F. Sauer, and A. G. Yodh, "Standardized platform for coregistration of non-concurrent diffuse optical and magnetic resonance breast images obtained in different geometries," J. Biomed. Opt. 12:5 (2007)

G. Boverman, E. L. Miller, D. H. Brooks, Q. Fang, S. A. Carp, J. J. Selb, and D. A. Boas, "Reconstruction of Tissue Dynamics in the Compressed Breast using Multiplexed Measurements and Temporal Basis Functions," 643413. Proc. of SPIE 6434 (2007)

G. Boverman, Q. Fang, S.A. Carp, E.L. Miller, D.H. Brooks, J.J. Selb, R.H. Moore, D.B. Kopans, D.A. Boas, “Spatio-temporal imaging of the hemoglobin in the compressed breast with diffuse optical tomography, Physics in Medicine and Biology,” 52, 3619-3641. (2007)

C. M. Carpenter, B. W. Pogue, S. Jiang, H. Dehghani, X. Wang, K. D. Paulsen, W. A. Wells, J. Forero, C. Kogel, J. B. Weaver, S. P. Poplack, and P. A. Kaufman, "Image-guided optical spectroscopy provides molecular-specific information in vivo: MRI-guided spectroscopy of breast cancer hemoglobin, water, and scatterer size," Opt. Lett. 32, 933-935. (2007)

C. Carpenter, S. Srinivasan, B. Pogue, H. Dehghani, and K. D. Paulsen, "A Comparison of Edge Constrained Optical Reconstruction Methods Incorporating Spectral and MR-Derived Spatial Information," 64310K. Proc. of SPIE 6431. (2007)

C. Carpenter, B. W. Pogue, S. Srinivasan, H. Dehghani, S. Jiang, K.D. Paulsen, C. Kogel, S. Poplack, “MR-Guided NIR tomography to determine breast cancer malignancy” Proceedings of the International Society for Magnetic Resonance Imaging in Medicine (ISMRM), May 19-25, Berlin, Germany (2007)

A. Cerussi, D. Hsiang, N. Shah, R. Mehta, A. Durkin, J. Butler, and B. J. Tromberg, "Predicting response to breast cancer neoadjuvant chemotherapy using diffuse optical spectroscopy," Proc. Natl. Acad. Sci. U. S. A. 104, 4014-4019. (2007)

R. Choe, S. D. Konecky, A. Corlu, K. Lee, T. Durduran, M. Grosicka-Koptyra, B. J. Czerniecki, J. C. Tchou, D. L. Fraker, A. DeMichele, M. A. Rosen, M. D. Schnall, B. Chance, and A. G. Yodh, "In vivo tumor/normal contrast of 48 breast tumors quantified by three-dimensional parallel-plate diffuse optical tomography," Clinical Cancer Research (in preparation). (2007)

S. H. Chung, A. Cerussi, S. Merritt, D. Hsiang, R. Mehta, B. Tromberg, “Tissue bound water studies on breast tumors using diffuse optical spectroscopy in Optical Tomography and Spectroscopy of Tissue VII,” Proc. of SPIE Vol. 6434. (2007)

A. Corlu, R. Choe, T. Durduran, M. A. Rosen, M. Schweiger, S. R. Arridge, M. D. Schnall, and A. G. Yodh, "Three-dimensional in vivo fluorescence diffuse optical tomography of breast cancer in humans," Opt. Express 15, pp. 6696-6716. (2007)

D. J. Cuccia, F. Bevilacqua, A.J. Durkin, F. Ayers, B.J. Tromberg, “Quantitation and Mapping of Turbid Media Optical Properties Using Modulated Imaging,” J. Biomed. Opt. (In Submission 2007)

A. L. Darling, P. K. Yalavarthy, H. Dehghani, and B. W. Pogue, "Interstitial Fluid Pressure due to Externally Applied Force in Breast Tissue," 64310Z. Proc. of SPIE 6431. (2007)

S. C. Davis, H. Dehghani, J. Wang, S. Jiang, B.W. Pogue, K.D. Paulsen, “Image-Guided Diffuse Optical Fluorescence Tomography Implemented with Laplacian-Structured Regularization” Optics Express 15(7) 4066-4082. (2007)

S. C. Davis, H. Dehghani, P.K. Yalavarthy, B.W. Pogue, K. D. Paulsen, “Comparing Two Regularization Techniques for Diffuse Optical Tomography” Proc. of SPIE 6434. (2007)

S. C. Davis, S. L. Gibbs, S. Jiang, K. D. Paulsen, B. W. Pogue, “Imaging Uptake of Photosensitizer With MR-Guided Optical Tomography” Proceedings of the International Photodynamic Association, 11th annual congress, Shanghai, P.R. China, March 28-31, 2007.

H. Dehghani, C. M. Carpenter, P. K. Yalavarthy, B. W. Pogue, and J. P. Culver, "Structural a Priori Information in Near-Infrared Optical Tomography," 64310B. Proc. of SPIE 6431. (2007)

Q. Fang, J. Selb, S. A. Carp, G. Boverman, D. B. Kopans, R. H. Moore, and D. A. Boas, "Clinical Data Analysis for the Combined Optical and Tomosynthesis Breast Imaging," 64310H. Proc. of SPIE 6431. (2007)

Q. Fang, J. Selb, S. A. Carp, G. Boverman, Q. Zhang, D. B. Kopans, R. H. Moore, E.L. Miller, D.H. Brooks, D.A. Boas, Combined optical imaging and mammography of the healthy breast: optical contrast derived from breast structure and compression, IEEE Transactions on Medical Imaging, in review

S.L. Gibbs, J.A. OHara, P.J. Hoopes, T. Hasan, B.W. Pogue, “Improved Murine Glioma Detection Following Modified Diet and Photobleaching of Skin PpIX Fluorescence” Proc. of the SPIE 6427. (2007)

S.L. Gibbs, S. C. Davis, J. A. O’Hara, B. W. Pogue, “Fluorescence Detection of Brain Tumors Non-Invasively in a Murine Model” Proceedings of the International Photodynamic Association, 11th annual congress, Shanghai, P.R. China, March 28-31, 2007.

S. Jiang, B.W. Pogue, and K.D. Paulsen, "Dynamic Frequency Domain Tomography System and Phantom Test," Proc. of SPIE 6431. (2007)

S. Jiang, C. Kogel, P. Kaufman, B.W. Pogue, K.D. Paulsen, ” Neoadjuvant chemotherapy monitoring with Multi-spectral NIR Tomography with MRI and Pathology validation” Proc. of SPIE 6431. (2007)

D. S. Kepshire, S. . Davis, H. Dehghani, K.D. Paulsen, and B.W. Pogue, "Subsurface diffuse optical tomography can localize absorber and fluorescent objects but recovered image sensitivity is nonlinear with depth," Appl. Opt. 46, 1669-1678. (2007)

D. Kepshire, S. Davis, H. Dehghani, K.D. Paulsen, B.W. Pogue, “Challenges in Sub-Surface Fluorescence Diffuse Optical Imaging “ Proc. of . SPIE 6434. (2007)

D. Kepshire, S. Davis, H. Dehghani, K.D. Paulsen, B.W. Pogue, “Fluorescence tomography characterization for sub-surface imaging with protoporphyrin IX” J. Biomed. Opt. (submitted, 2007)

C. Klifa, J. Hattangadi, M. Watkins, A. Li, T. Sakata, B.J. Tromberg, N. Hylton, C. Park, “Combination of magnetic resonance imaging and diffuse optical spectroscopy to predict radiation response in the breast: an exploratory pilot study in Multimodal Biomedical Imaging II,” Proc. of SPIE Vol. 6431. (2007)

S.D. Konecky, R. Choe, A. Corlu, K. Lee, R. Wiener, J.R. Saffer, R. Freifelder, J.S. Karp, N. Hajjioui, F. Azar, and A.G. Yodh, "Coregistered diffuse optical and positron emission tomography of human breast," Med. Phys. (in preparation 2007)

S.D. Konecky, G.Y. Panasyuk, K. Lee, V. Markel, A.G. Yodh, and J.C. Schotland, "Imaging complex structures with diffuse light," Proc. Natl. Acad. Sci. U. S. A. (in preparation 2007)

S. Kukreti, A. Cerussi, B.J. Tromberg, E. Gratton, “Intrinsic tumor biomarkers revealed by novel double-differential spectroscopic analysis of near-infrared spectra,” J Biomed Opt 12: 020509. (2007)

S. Kukreti, A. Cerussi, B.J. Tromberg, E. Gratton, “Intrinsic near infrared spectroscopic markers of breast tumors,” Disease Markers. (In Press)

S. Kukreti, “Intrinsic Spectroscopic Markers of Tumors Revealed by Double-Differential Analysis of Near-Infrared Absorption Spectra,” Ph.D. Dissertation, University of Illinois, Dept. of Physics. (2007)

A. Li, R. Kwong, A. Cerussi, S. Merritt, C. Hayakawa, B.J. Tromberg, “Method for Recovering Quantitative Broadband Diffuse Optical Spectra from Layered Media,” Applied Optics 46:21, 4828-4833. (2007)

K. No, “HBS A Handheld Breast Cancer Detector Based on Frequency Domain Photon Migration,” Ph.D. Dissertation, University of California, Irvine, Dept. of Electrical Engineering Computer Science, (2007)

B.W. Pogue, M.S. Patterson, “Review of Tissue simulating dosimeters for Near-infrared spectroscopy, imaging and dosimetry” Proc. of SPIE 6430B. (2007)

B.W. Pogue, S.C. Davis, H. Dehghani, P.K. Yalavarthy, C. Kogel, J.B. Weaver, S.P. Poplack, K.D. Paulsen, “MRI-guided optical tomography to reduce false positives in MRI,” Proc. of SPIE 6431. (2007)

S.P. Poplack, T.D. Tosteson, W.A. Wells, B.W. Pogue, P.M. Meaney, A. Hartov, C.A. Kogel, S.K. Soho, J.J. Gibson, and K.D. Paulsen, "Electromagnetic breast imaging: results of a pilot study in women with abnormal mammograms," Radiology 243, 350-359 (2007)

M. Schegerin, P.A. Kaufman, A. Tosteson, K.D. Paulsen, B.W. Pogue, “Prognostic Imaging in Neoadjuvant Chemotherapy of Locally-Advanced Breast Cancer should be Cost Effective” (submitted, 2007)

X. Song, B.W. Pogue, H. Dehghani, S. Jiang, K.D. Paulsen, T.D. Tosteson, “Receiver Operating Characteristic and Location Analysis of Simulated Near-Infrared Tomography Images” J. Biomed. Opt. 12. (2007)

S. Srinivasan, B.W. Pogue, S. Davis, F. Leblond, “Improved quantification of fluorescence in 3-D In a realistic mouse phantom” Proc. of the SPIE 6434. (2007)

S. Srinivasan, B.W. Pogue, C. Carpenter, P.K. Yalavarthy, K. Paulsen, “A boundary element approach for image-guided near-infrared absorption and scatter estimation” Med. Phys. 34, 11, 4545-4557. (2007)

J. Wang, S.C. Davis, S. Srinivasan, S. Jiang , B.W. Pogue, K.D. Paulsen, “Localized Region Spectroscopy with Diffuse Near-Infrared Tomography: Analysis of Broadband Frequency-Domain Spectral Data” (submitted, 2007)

J. Wang, S.C. Davis, S. Srinivasan, S. Jiang , B.W. Pogue, K.D. Paulsen, “MRI-localized region spectroscopy with NIR: analysis of Number of wavelengths needed, Spatial prior false positives, Experimental feasibility” Proc. of the SPIE 6431. (2007)

X. Wang, W.A. Wells, K.D. Paulsen, B.W. Pogue, “Interpreting NIR scattering in breast tissue” Proc. of SPIE 6446. (2007)

C. Zhou, R. Choe, N. Shah, T. Durduran, G. Yu, A. Durkin, D. Hsiang, R. Mehta, J. Butler, A. Cerussi, B.J. Tromberg, and A.G. Yodh, "Diffuse optical monitoring of blood flow and oxygenation in human breast cancer during early neoadjuvant chemotherapy," J. Biomed. Opt. 12. (2007)

2006

F. S. Azar, N. Hajjioui, A. Khamene, L. Grady, K. Lee, R. Choe, A. Corlu, S. D. Konecky, A. G. Yodh, and F. Sauer, “A software platform for visualization and multimodal registration of diffuse optical tomography and MRI of breast cancer,” Proc. SPIE 6081. (2006)

M. Bartek, X. Wang, W. Wells, K. D. Paulsen, and B. W. Pogue, "Estimation of subcellular particle size histograms with electron microscopy for prediction of optical scattering in breast tissue," J. Biomed. Opt. 11:6. (2006)

O. Birgul, G. Gulsen, R. Shafiiha, M.B. Unlu, O. Nalcioglu, “In vivo Small Animal Imaging using Combined MR-DOT System,” OSA Biomedical Optics Topical Meeting, Technical Digest, p. TuG1. (2006)

B. Brooksby, B.W. Pogue, S. Jiang, H. Dehghani, S. Srinivasan, C. Kogel, TD. Tosteson, J. Weaver, SP Poplack and K.D. Paulsen, “Imaging breast adipose and fibroglandular tissue molecular signatures by using hybrid MRI-guided near-infrared spectral tomography,” Proceed. Nat. Acad. Sci., 103(23): 8828-8833. (2006)

S.A. Carp, T. Kauffman, Q. Fang, E. Rafferty, R. Moore, D. Kopans, D.A. Boas, Compression induced changes in the physiological state of the breast as observed through frequency domain photon migration measurements, Journal of Biomedical Optics, 11(6): 064016. (2006)

A. Cerussi, N. Shah, D. Hsiang, M. Compton, B. Tromberg, “In vivo absorption, scattering and physiologic properties of 58 malignant breast tumors determined by broadband diffuse optical spectroscopy,” J. Biomed. Opt., 11(4). (2006)

A. Cerussi, N. Shah, D. Hsiang, A. Durkin, J. Butler, B.J. Tromberg, “In vivo absorption, scattering, and physiologic properties of 58 malignant breast tumors determined by broadband diffuse optical spectroscopy,” J.Biomed.Opt. 11. 4. 044005. (2006)

Q. Fang, D. Boas, G. Boverman, Q. Zhang, T. Kauffman, “Nonlinear image reconstruction algorithm for diffuse optical tomography using iterative block solver and automatic mesh generation from tomosynthesis images” Proc. SPIE 6081. (2006)

G. Gulsen, O. Birgul, B. Xiong O. Nalcioglu, “Design and Implementation of a Multi-Frequency Diffuse Optical Tomography (MF-DOT) System,” J. Biomed. Opt. 11(1), 014020. (2006)

G. Gulsen, O. Birgul, M.B. Unlu, R. Shafiiha, O.Nalcioglu, “A Multi-modality system for animal imaging: hybrid MR-DOT system,” J. Tech. Cancer Res. Treat., 5(4) 351-363. (2006)

G. Gulsen, M.B. Unlu, O. Birgul, H. Yan, O. Nalcioglu, “A Multi-modality system for dynamic imaging of cancer,” (*Invited paper for special section on Multi-modality Imaging)Proceedings of IEEE, International Symposium on Biomedical Imaging, April 6-9, 2006.

G. Gulsen, O. Birgul, M. B. Unlu, R. Shafiiha, and O. Nalcioglu, "Combined diffuse optical tomography (DOT) and MRI system for cancer imaging in small animals," Technol. Cancer. Res. Treat. 5, 351-363. (2006)

C. Klifa, J. Hattangadi, A. Li, B.J. Tromberg, N.M. Hylton, C. Park, “Combination of magnetic resonance imaging and diffuse optical spectroscopy to predict radiation response in the breast: an exploratory pilot study,” Breast Cancer Res.Treat. 100. S202-S202. (2006)

S. Kukreti, A. Cerussi, B.J. Tromberg, E. Gratton, “Intrinsic markers revealed by a novel spectral Analysis of near-IR spectra of breast tumors,” Breast Cancer Res.Treat. 100. S44-S44. (2006)

K.S. No, Q. Xie, R. Kwong, A. Cerussi, B.J. Tromberg, P.H. Chou, “Hbs: A handheld breast cancer detector based on frequency domain photon migration with full heterodyne,” presented at Proc. IEEE Biomedical Circuits and Systems, The British Library, London, (2006)

D. Piao, S. Jiang, H. Dehghani, S. Srinivasan, B.W. Pogue “Instrumentation of rapid near-infrared diffuse optical tomography for imaging of tissue at 35 frames per second,” Proc. SPIE 6081. (2006)

B.W. Pogue, M.S. Patterson, “Review of Tissue Simulating Phantoms for Optical Spectroscopy, Imaging and Dosimetry” J. Biomed. Opt., 11(4). (2006).

B.W. Pogue, S. C. Davis, X. Song, B.A. Brooksby, H. Dehghani, K.D Paulsen, “Image Analysis Methods for Diffuse Optical Tomography” J. of Biomed. Opt., 11, (2006)

B.W. Pogue, S.C. Davis, X. Song, B.A. Brooksby, H. Dehghani, and K.D. Paulsen, "Image analysis methods for diffuse optical tomography," J. Biomed. Opt. 11, 33001 (2006)

P. Simonson, E. D'Amico, E. Gratton, “Modulation of an optical needle's reflectivity alters the average photon path through scattering media,” J. of Biomed. Opt., 11(1), 014023. (2006)

S. Srinivasan, B.W. Pogue, S. Jiang, H. Dehghani, C. Kogel, S. Soho, J.J. Gibson, T.D. Tosteson, S.P. Poplack, K.D. Paulsen, “Interpreting Hemoglobin and Water Concentration, Oxygen Saturation, and Scattering Measured In-Vivo with Direct Spectral Reconstruction in Near-Infrared Breast Tomography” Acad. Rad., 13: 195-202. (2006).

S. Srinivasan, B.W. Pogue, S. Jiang, H. Dehghani, S. Jiang, C. Kogel, S. Soho, J.J. Gibson, T.D. Tosteson, S.P. Poplack and K.D. Paulsen, “In vivo hemoglobin and water concentrations, oxygen saturation and scattering estimates from near-infrared breast tomography using spectral reconstruction,” Acad. Rad,13:195-202. (2006)

M. Burcin Unlu, O. Birgul, R. Shafiiha, G. Gulsen, and O. Nalcioglu, "Diffuse optical tomographic reconstruction using multifrequency data," J. Biomed. Opt. 11, 054008 (2006)

X. Wang, B.W. Pogue, S. Jiang, H. Dehghani, X. Song, S. Srinivasan, B.A. Brooksby, K.D. Paulsen, C. Kogel, S.P. Poplack, W.A. Wells, “Image Reconstruction of Effective Mie Scattering Parameters of Breast Tissue In Vivo with Near-Infrared Tomography” J. Biomed. Opt., 11(4), (2006)

X. Wang, B.W. Pogue, S. Jiang, H. Dehghani, X. Song, S. Srinivasan, B.A. Brooksby, K.D. Paulsen, C. Kogel, S.P. Poplack, and W.A. Wells, "Image reconstruction of effective Mie scattering parameters of breast tissue in vivo with near-infrared tomography," J. Biomed. Opt. 11, 041106 (2006)

W.A. Wells, G.N. Schwartz, P.M. Morganelli, B.F. Cole, J.J. Gibson, W.B. Kinlaw, "Expression of "Spot 14" (THRSP) predicts disease free survival in invasive breast cancer: immunohistochemical analysis of a new molecular marker," Breast Cancer Res. Treat. 98, 231-240. (2006)

2005

F. S. Azar, M. ElBawab, A. Khamene, K. Lee, R. Choe, A. Corlu, S. D. Konecky, A. G. Yodh, F. Sauer, “Multimodal information integration and visualization: optical imaging and MRI,” Proc. SPIE 6009. (2005)

G. Boverman, E. Miller, D. Brooks, A. Li, Q. Zhang, T. Chaves, T, D.A. Boas, “Quantitative spectroscopic diffuse optical tomography of the breast guided by imperfect a priori structural information,” Phys. Med. Biol. 50 No 17, 3941-3956. (2005)

G. Boverman, E. Miller, A. Li, Q. Zhang, T. Chaves, T, D.A. Boas, “Quantitative spectroscopic diffuse optical tomography of the breast guided by imperfect a priori structural information,” Phys. Med. Biol. 50: 3941–3956. (2005)

B. Brooksby, S. Jiang, H. Dehghani, B. W. Pogue, K.D. Paulsen, J. Weaver, C. Kogel, S.P. Poplack, “Combining near infrared tomography and magnetic resonance imaging to study in vivo breast tissue: implementation of a Laplacian-type regularization to incorporate MR structure,” J. Biomed. Opt., 10(5) 051504 1-10. (2005)

B. Brooksby, S. Srinivasan, S. Jiang, H. Dehghani , B. W. Pogue, K. D. Paulsen, J.Weaver, C. Kogel and S. P. Poplack, “Spectral-prior information improves Near-Infrared diffuse tomography more than spatial-prior,” Opt. Lett. 30(15), pp. 1968-1975. (2005)

B. Brooksby, S. Srinivasan, B. W. Pogue, S. Jiang, H. Dehghani, C. Kogel, J. Weaver, S. Poplack, J. D. Pearlman, K. D. Paulsen, “Quantifying adipose and fibroglandular breast tissue properties using MRI-guided NIR tomography,” Proc. of SPIE 5693. (2005)

R. Choe, A. Corlu, K. Lee, T. Durduran, S. D. Konecky, M. Grosicka-Koptyra, S. R. Arridge, B. J. Czerniecki, D. L. Fraker, A. DeMichele, B. Chance, M. A. Rosen, A. G. Yodh, “Diffuse optical tomography of breast cancer during neoadjuvant chemotherapy: A case study with comparison to MRI,” Medical Physics 32 (4): 1128-1139. (2005)

A. Corlu, R. Choe, T. Durduran, K. Lee, M. Schweiger, S. R. Arridge, E. M. C. Hillman, A. G. Yodh, “Diffuse optical tomography with spectral constraints and wavelength optimization,” Applied Optics 44, 2082- 2093. (2005)

S. C. Davis, B. W. Pogue, H. Dehghani, K. D. Paulsen, “Contrast-Detail Analysis of Diffuse Optical Fluorescence Tomography Reconstruction,” J. Biomed. Opt., 10(5), 050501. (2005)

H. Dehghani, B. Brooksby, B. W. Pogue, K. D. Paulsen, “Effect of Refractive Index on Near Infrared Tomography of the Breast,” Applied Optics 44(10) 1870-1878. (2005)

D. Hsiang, N. Shah, H. Yu, M.Y. Su, A. Cerussi, J. Butler, C. Baick, R. Mehta, O. Nalcioglu, B. Tromberg, “Coregistration of dynamic contrast enhanced MRI and broadband diffuse optical spectroscopy for characterizing breast cancer,” J. Tech. Cancer Res. Treat. Oct:4(5):549-58. (2005)

A. Li, G. Boverman, Y. Zhang, D. Brooks, E. Miller, M. Kilmer, E. Hillman, D.A. Boas, “Optimal linear inverse solution with multiple priors in diffuse optical tomography,” Applied Optics 44(10): 1948-1956. (2005)

N. Shah, J. Gibbs, D. Wolverton, A. Cerussi, N. Hylton, B.J. Tromberg, “Combined diffuse optical spectroscopy and contrast-enhanced magnetic resonance imaging for monitoring breast cancer neoadjuvant chemotherapy: a case study.” J Biomed Opt. Sep-Oct:10(5):051503. (2005)

S. Srinivasan, B.W. Pogue, S. Jiang, H. Dehghani, K.D Paulsen, “Spectrally Constrained Chromophore and Scattering NIR Tomography Provides Quantitative and Robust Reconstruction,” Applied Optics 44(10) 1858-1869. (2005)

S. Srinivasan, B.W. Pogue, S. Jiang, H. Dehghani, K.D. Paulsen, “Spectrally Constrained NIR tomography for breast Imaging: Simulations and Clinical Results,” Proc. of SPIE 5693. (2005)

S. Srinivasan, B. W. Pogue, B. Brooksby, S. Jiang, H. Dehghani, C. Kogel, W.A. Wells, S. Jiang, S.P. Poplack, K.D. Paulsen, “Near-Infrared Characterization of Breast Tumors In Vivo using Spectrally constrained reconstruction” Tech. Cancer Res. Treat., 4(5) 513-526. (2005).

B.J. Tromberg, A.E. Cerussi, N. Shah, M. Compton, A. Durkin, D. Hsiang, J. Butler, R. Mehta, “Imaging in breast cancer: diffuse optics in breast cancer: detecting tumors in pre-menopausal women and monitoring neoadjuvant chemotherapy,” Breast Cancer Res. 2005;7(6):279-85. (2005)

B.J. Tromberg, “Optical Scanning and Breast Cancer,” Acad. Radiol., 12 (8) 923-924. (2005)

X. Wang, B.W. Pogue, S. Jiang, X. Song, K.D. Paulsen, C. Kogel, S.P. Poplack, W.A. Wells, “Approximation of Mie Scattering Parameters in Near-Infrared Tomography of Normal Breast Tissue In Vivo” J. Biomed. Opt., 10(5), 051704. (2005)

X. Wang, B.W. Pogue, S. Jiang, X. Song , K.D. Paulsen, C. Kogel, S.P. Poplack, W.A. Wells, "Approximation of Mie Scattering Parameters in Near-Infrared Tomography of Normal Breast Tissue In Vivo" J. Biomed. Opt., 10(5). (2005)

X. Wang, B.W. Pogue, S. Jiang, X. Song, K.D. Paulsen, C. Kogel, S.P. Poplack, W.A. Wells “Approximation of Mie Scattering Parameters in Near- Infrared Tomography of Normal Breast Tissue In Vivo” J. Biomed. Opt., 10(5). (2005)

H. Xu, B.W. Pogue, R. Springett, H. Dehghani, “Spectral Derivative Based Image Reconstruction Provides Inherent Insensitivity to Coupling and Geometric Errors” Opt. Lett., 29(17) 2043-2045. (2005)

H. Xu, R. Springett, H. Dehghani, B.W. Pogue, K.D. Paulsen, J.F. Dunn, “An MRI-coupled Broadband Near Infrared Tomography System for Small Animal Brain Studies” Applied Optics, 44(11) 2177- 2188. (2005)

H. Xu, B.W. Pogue, R. Springett, H. Dehghani, ”Spectral Derivative Based Image Reconstruction Provides Inherent Insensitivity to Coupling and Geometric Errors?” Opt. Lett., 30(21), pp. 2912-2914. (2005)

H. Xu, R. Springett, H. Dehghani, B.W. Pogue, K.D. Paulsen, J.F. Dunn, “An MRI-coupled Broad-band Near Infrared Tomography System for Small Animal Brain Studies?” Applied Optics, 44(11) 2177-2188. (2005)

P.K. Yalavarthy, H. Dehghani, B.W. Pogue, K.D. Paulsen, "Measurement optimization for Near-Infrared optical tomography,” Proc. of SPIE 5693. (2005)

G.Q. Yu, T. Durduran, C. Zhou, H.W. Wang, M.E. Putt, H.M. Saunders, C.M. Sehgal, E. Glatstein, A.G. Yodh, T.M. Busch, “Noninvasive monitoring of murine tumor blood flow during and after photodynamic therapy provides early assessment of therapeutic efficacy,” Clinical Cancer Research 11 (9): 3543-3552. (2005)

2004

D.B. Jakubowski, A.E. Cerussi, F. Bevilacqua, N. Shah, D. Hsiang, J. Butler, B.J. Tromberg, “Monitoring neoadjuvant chemotherapy in breast cancer using quantitative diffuse optical spectroscopy: a case study,” J. Biomed. Opt. 9(1): 230-238. (2004)

T. Durduran, G. Yu, M.G. Burnett, J.A. Detre, J.H. Greenberg, J. Wang, C. Zhou, A.G. Yodh, “Diffuse optical measurement of blood flow, blood oxygenation and metabolism in human brain during sensorimotor cortex activation,” Opt. Lett. 29, 1766-1768. (2004)

A. Li, Q. Zhang, J.P. Culver, E.L. Miller, D.A. Boas, "Reconstructing chromosphere concentration images directly by continuous-wave diffuse optical tomography," Opt. Lett. 29(3): 256-258. (2004)

N. Shah, A.E. Cerussi, D.B. Jakubowski, D. Hsiang, J. Butler, B.J. Tromberg, Spatial Variations in Optical and Physiological Properties of Healthy Breast Tissue,” J. Biomed. Opt.: Special Issue on Biomedical Optics and Women's Health 9(3): 543-540. (2004)

X. Song, B.W. Pogue, S. Jiang, M.M. Doyley, H. Dehghani, T.D. Tosteson, K.D. Paulsen, "Automated Region Detection Based Upon Contrast To Noise Ratio in Near-Infrared Tomography," Applied Optics 43(5) 1053-1062. (2004)

S. Srinivasan, B.W. Pogue, H. Dehghani, S. Jiang, X. Song and K.D. Paulsen, "Improved Quantification of Small Objects in Near-Infrared Diffuse Optical Tomography J. Biomed. Opt., 9, 6, 1161-1171. (2004)

H.-W. Wang, M.E. Putt, M.J. Emanuele, D.E. Shin, E. Glatstein, A.G. Yodh, T. M. Busch, “Treatment induced changes in tumor oxygenation predict photodynamic therapy outcome,” Cancer Research 64, 7553-7561. (2004)

H. Xu, B. Pogue, R. Springett, H. Dehghani, J.F. Dunn, “Absorption and scattering imaging of tissue with steady-state second-differential spectral-analysis tomography,” Opt. Lett. 29, 17, 2043-2045. (2004)

2003

A. Corlu, T. Durduran, R. Choe, M. Schweiger, E.M.C. Hillman, S.R. Arridge, A.G. Yodh, “Uniqueness and wavelength optimization in continuous-wave multispectral diffuse optical tomography,” Opt. Lett. 28, 2339-2341. (2003)

M.E. Kilmer, E. L. Miller, A. Barbaro, D.A. Boas, "Three-Dimensional Shape-Based Imaging of Absorption Perturbation for Diffuse Optical Tomography," Applied Optics 42(16): 3129-3144. (2003)

A. Li, E. L. Miller, M.E Kilmer, T.J. Brukilacchio, T. Chaves, J. Stott, Q. Zhang, T. Wu, M. Chorlton, R. H. Moore, D. B. Kopans, D. A. Boas, "Tomographic optical breast imaging guided by three-dimensional mammography." Applied Optics 42(25): 5181-5190. (2003)

S. Merritt, G. Gulsen, G. Chiou, Y. Chu, C. Deng, A.E. Cerussi, A.J. Durkin, B.J. Tromberg, O. Nalcioglu, “Comparison of water and lipid content measurements using diffuse optical spectroscopy and MRI in emulsion phantoms,” Technol Cancer Res Treat.;2(6):563-9. (2003)

N. Shah, A.E. Cerussi, D. Jakubowski, D. Hsiang, J. Butler, B.J. Tromberg, “The role of diffuse optical spectroscopy in the clinical management of breast cancer,” Dis Markers;19(2-3):95-105. (2003)

J.J. Stott, J.P. Culver, S.R. Arridge, D.A. Boas, "Optode Positional Calibration in Diffuse Optical Tomography," Applied Optics 42(16): 3154-3162. (2003)